hi Jake,
root_boot.img is the right file to get rooted Android, but after flashing it you should use Magisk manager app, inside that install Magisk root files, reboot and you'll have a rooted Android working.
The scatter file generated is so ok. Don't miss to download the NVRAM backup, and put a folder both scatter file and backup, it is very important, to restore or correct wrong operations...
After installing drivers for Windows and Flash Tool, put Gemini in USB debug, follow the PC instructions and when you click on the "Download" button restart Gemini, so the Tool handle Gemini and continue the process.
I re-flashed all (rooted Android, Debian Linux, Sailfish OS), so first I made a backup (via Google backup), then flashed and Android restored plenty of settings and apps, at the end I passed to Magisk (install it in the main memory as here it didn't work if installed in the SD card).
If all goes ok and you'll need to change something, you can use "Download" only (maybe deselecting those files you don't need), but the first time you must use "Firmware upgrade" and this delete every files...
Hope this help.
Salvo