Ok, that sounds fair enough, but...
1) The SL-C1000 / 3000 / 3100 can all sync with Intellisync, so unless Qtopia Desktop and Intellisync are using different methods to access the device they should both work
2) The Qtopia Desktop I'm using is managing to connect and handshake with the Zaurus, but is getting version information it doesn't like and so stops. So they must be talking at least approximately the same language to get that far.
Nobody else had a go at this?